Download data from EMPIAR:从我的终端直接下载数据

时间:2021-07-05 18:58:45   收藏:0   阅读:0
# Author by zhangyida
# 詹皇明年夺冠
download_empiar.sh

#!/usr/bin/env bash

# Downloads a dataset with a given accession code from EMPIAR

##########

ACCESSION_CODE=$1
DEST=‘/work3/cse/scarf1041‘

##########

usage () {
echo ‘download_empiar.sh <accession_code>‘
}

if [ $# -eq 0 ]
then usage
exit 1
fi

##########

EMPIAR_URI="ftp://ftp.ebi.ac.uk/empiar/world_availability/${ACCESSION_CODE}/*"
LOGFILE="${DEST}/EMPIAR-${ACCESSION_CODE}_download.log"

wget \
--continue \
--background \
--directory-prefix ${DEST} \
--mirror ${EMPIAR_URI} \
--output-file ${LOGFILE} \
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